| conftest.py |
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0 |
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0 |
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100% |
| physiodsp / __init__.py |
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ActivityRecognition.run |
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| physiodsp / activity / activity_recognition.py |
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| physiodsp / activity / activity_score.py |
ActivityScore.__init__ |
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ActivityScore._validate_weights |
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ActivityScore._compute_baseline_stats |
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ActivityScore._score_steps |
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6 |
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ActivityScore._score_sleep |
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0 |
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ActivityScore._score_training |
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ActivityScore._score_resting |
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22 |
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| physiodsp / activity / activity_score.py |
ActivityScore.run |
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| physiodsp / activity / activity_score.py |
ActivityScore.aggregate |
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ActivityScore.get_activity_score_interpretation |
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| physiodsp / activity / activity_score.py |
(no function) |
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36 |
0 |
0 |
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EnergyExpenditure.run |
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1 |
1 |
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| physiodsp / activity / energy_expenditure.py |
(no function) |
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| physiodsp / activity / enmo.py |
ENMO.__init__ |
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0 |
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| physiodsp / activity / enmo.py |
ENMO.run |
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0 |
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| physiodsp / activity / enmo.py |
ENMO.aggregate |
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2 |
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0 |
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| physiodsp / activity / enmo.py |
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| physiodsp / activity / pim.py |
PIMAlgorithm.__init__ |
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3 |
0 |
0 |
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| physiodsp / activity / pim.py |
PIMAlgorithm.run |
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6 |
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0 |
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| physiodsp / activity / pim.py |
PIMAlgorithm.aggregate |
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5 |
5 |
0 |
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| physiodsp / activity / pim.py |
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13 |
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0 |
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| physiodsp / activity / step_count.py |
StepCount.__init__ |
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1 |
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0 |
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| physiodsp / activity / step_count.py |
StepCount.run |
|
75 |
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0 |
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| physiodsp / activity / step_count.py |
StepCount.aggregate |
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2 |
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StepCount._set_empty_outputs |
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10 |
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StepCount._map_activity_to_bins |
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8 |
1 |
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| physiodsp / activity / step_count.py |
highpass_filter |
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3 |
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0 |
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| physiodsp / activity / step_count.py |
adaptive_bandpass_filter |
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7 |
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autocorrelation_peak |
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16 |
2 |
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psd_dominant_freq |
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11 |
11 |
0 |
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| physiodsp / activity / step_count.py |
is_locomotion_window |
|
16 |
7 |
0 |
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| physiodsp / activity / step_count.py |
group_locomotion_runs |
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17 |
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detect_steps_in_window |
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40 |
7 |
0 |
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group_steps_into_bouts |
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18 |
5 |
0 |
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| physiodsp / activity / step_count.py |
_make_bout |
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2 |
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| physiodsp / activity / step_count.py |
filter_short_bouts |
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1 |
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| physiodsp / activity / step_count.py |
merge_close_bouts |
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13 |
0 |
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| physiodsp / activity / step_count.py |
interpolate_missed_steps |
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14 |
1 |
0 |
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| physiodsp / activity / step_count.py |
steps_to_cadence_series |
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6 |
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0 |
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| physiodsp / activity / step_count.py |
(no function) |
|
51 |
0 |
0 |
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| physiodsp / activity / time_above_thr.py |
TimeAboveThr.__init__ |
|
4 |
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0 |
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| physiodsp / activity / time_above_thr.py |
TimeAboveThr.run |
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TimeAboveThr.aggregate |
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5 |
5 |
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| physiodsp / activity / time_above_thr.py |
(no function) |
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15 |
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0 |
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| physiodsp / activity / zero_crossing.py |
ZeroCrossing.__init__ |
|
5 |
0 |
0 |
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| physiodsp / activity / zero_crossing.py |
ZeroCrossing.__preprocess_imu |
|
6 |
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0 |
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| physiodsp / activity / zero_crossing.py |
ZeroCrossing.run |
|
6 |
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0 |
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| physiodsp / activity / zero_crossing.py |
ZeroCrossing.aggregate |
|
5 |
0 |
0 |
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| physiodsp / activity / zero_crossing.py |
(no function) |
|
20 |
0 |
0 |
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| physiodsp / balance_tests / __init__.py |
(no function) |
|
0 |
0 |
0 |
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100% |
| physiodsp / balance_tests / sway.py |
Sway.__init__ |
|
2 |
0 |
0 |
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| physiodsp / balance_tests / sway.py |
Sway.run |
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17 |
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0 |
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| physiodsp / balance_tests / sway.py |
Sway.__index_extraction |
|
15 |
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0 |
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| physiodsp / balance_tests / sway.py |
Sway.__get_ellipse_area |
|
9 |
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0 |
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| physiodsp / balance_tests / sway.py |
(no function) |
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18 |
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| physiodsp / base.py |
BaseAlgorithm.__init__ |
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1 |
1 |
0 |
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BaseAlgorithm.algorithm_name |
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1 |
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0 |
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BaseAlgorithm.version |
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1 |
0 |
0 |
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| physiodsp / base.py |
BaseAlgorithm.window_len |
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1 |
1 |
0 |
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| physiodsp / base.py |
BaseAlgorithm.aggregation_window |
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1 |
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0 |
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| physiodsp / base.py |
BaseAlgorithm.preprocess |
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1 |
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0 |
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| physiodsp / base.py |
BaseAlgorithm.run |
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1 |
1 |
0 |
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| physiodsp / base.py |
BaseAlgorithm.aggregate |
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6 |
0 |
0 |
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| physiodsp / base.py |
(no function) |
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20 |
0 |
0 |
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| physiodsp / sensors / __init__.py |
(no function) |
|
0 |
0 |
0 |
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| physiodsp / sensors / imu / __init__.py |
(no function) |
|
0 |
0 |
0 |
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| physiodsp / sensors / imu / accelerometer.py |
(no function) |
|
7 |
0 |
0 |
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| physiodsp / sensors / imu / base.py |
IMUData.magnitude |
|
1 |
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0 |
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| physiodsp / sensors / imu / base.py |
IMUData.to_matrix |
|
1 |
0 |
0 |
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100% |
| physiodsp / sensors / imu / base.py |
(no function) |
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12 |
0 |
0 |
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100% |
| tests / __init__.py |
(no function) |
|
0 |
0 |
0 |
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100% |
| tests / test_activity_enmo.py |
test_activity_enmo |
|
8 |
0 |
0 |
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| tests / test_activity_enmo.py |
(no function) |
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11 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_algorithm |
|
15 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_absolute_values |
|
14 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_positive_values |
|
14 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_zero_values |
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13 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_algorithm_properties |
|
5 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_estimate_returns_self |
|
7 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_data_preservation |
|
17 |
0 |
0 |
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| tests / test_activity_pim.py |
test_pim_mixed_values |
|
17 |
0 |
0 |
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100% |
| tests / test_activity_pim.py |
(no function) |
|
17 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_excellent |
|
11 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_good |
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11 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_fair |
|
11 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_poor |
|
11 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_critical |
|
11 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_algorithm_properties |
|
9 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_minimum_data |
|
5 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_personalizes_to_baseline |
|
13 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_output_structure |
|
15 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_weighted_combination |
|
8 |
0 |
0 |
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100% |
| tests / test_activity_score.py |
test_activity_score_baseline_stats_stored |
|
13 |
0 |
0 |
|
100% |
| tests / test_activity_score.py |
(no function) |
|
21 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
make_sine_accel |
|
6 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
make_accel_data |
|
6 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
run_step_count_on_sine |
|
4 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
make_test_bouts |
|
1 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_highpass_removes_dc |
|
4 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_highpass_preserves_gait_frequencies |
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4 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_sleep_window_rejected |
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5 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_pure_sine_is_periodic |
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4 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_noise_is_not_periodic |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_walk_window_detected |
|
6 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_run_window_detected |
|
5 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_slow_walk_accuracy |
|
6 |
0 |
0 |
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100% |
| tests / test_activity_step_count.py |
test_step_count_running_accuracy |
|
6 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_amplitude_invariance |
|
5 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_filter_short_bouts |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_merge_close_bouts |
|
5 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_no_merge_far_bouts |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_interpolate_missed_steps |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_cadence_series_bin_count |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_cadence_series_values |
|
3 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_accuracy_all_speeds |
|
5 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_zero_steps_sleep |
|
7 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_biomarker_schema |
|
6 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_total_steps_consistency |
|
2 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_noisy_free_living_walk |
|
4 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_bout_merge_fragmentation |
|
12 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
test_step_count_aggregate_output_shape |
|
6 |
0 |
0 |
|
100% |
| tests / test_activity_step_count.py |
(no function) |
|
35 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_activity_time_above_thr |
|
15 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_time_above_thr_all_above_threshold |
|
14 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_time_above_thr_all_below_threshold |
|
14 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_time_above_thr_custom_settings |
|
19 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_time_above_thr_algorithm_properties |
|
7 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
test_time_above_thr_output_structure |
|
13 |
0 |
0 |
|
100% |
| tests / test_activity_time_above_thr.py |
(no function) |
|
15 |
0 |
0 |
|
100% |
| tests / test_activity_zero_crossing.py |
test_activity_zero_crossing |
|
17 |
0 |
0 |
|
100% |
| tests / test_activity_zero_crossing.py |
(no function) |
|
10 |
0 |
0 |
|
100% |
| tests / test_balance_tests_sway.py |
test_balance_test_sway |
|
13 |
0 |
0 |
|
100% |
| tests / test_balance_tests_sway.py |
(no function) |
|
10 |
0 |
0 |
|
100% |